Student Tracker Search

• Zijun Gao, Keyi Han, Xuanwen Hua, Wenhao Liu, Shu Jia, "hydroSIM: super-resolution speckle illumination microscopy with a hydrogel diffuser," Biomed. Opt. Express 15, 3574 (2024)

• Huang, Xinyuan, Xiujuan Gao, and Ling Fu. "BINGO: a blind unmixing algorithm for ultra-multiplexing fluorescence images." Bioinformatics 40.2 (2024): btae052.
• Tadesse, Kidan, et al. "Three-dimensional multifocal scanning microscopy for super-resolution cell and tissue imaging." Optics Express 31.23 (2023): 38550-38559.
• Lim, Sumin, et al. "Multiphoton super-resolution imaging via virtual structured illumination." arXiv preprint arXiv:2404.11849 (2024).
• WANG, GUAN, et al. "Grating-free autofocus for single-pixel microscopic imaging."

Weiss DA*, Borsa AM*, Pala A, Sederberg AJ, Stanley GB. A machine learning approach for real-time cortical state estimation. J Neural Eng. 2024 Feb 1;21(1):10.1088/1741-2552/ad1f7b. doi: 10.1088/1741-2552/ad1f7b. PMID: 38232377; PMCID: PMC10868597.

Ehrlich S, VandeLoo AD, Badawy M, Gonzalez MM, Stockslager M, Yang A, Sinha S, Bracha S, Park D, Magondu B, Yang B, Boyden ES, Forest CR. Screening channelrhodopsins using robotic intracellular electrophysiology and single cell sequencing. J Neurosci Methods. 2026 Apr;428:110663. doi: 10.1016/j.jneumeth.2025.110663. Epub 2025 Dec 18. PMID: 41421605.

Ehrlich S, VandeLoo AD, Magondu B, Chien A, Sinha S, Boyden ES, Forest CR. Mutation E300 recommended by protein language models gives ChrimsonR amplified photocurrent response. bioRxiv [Preprint]. 2026 May 17:2026.05.13.725064. doi: 10.64898/2026.05.13.725064. PMID: 42182401; PMCID: PMC13192664.

VandeLoo AD, Malta NJ, Sanganeriya S, Aponte E, van Zyl C, Xu D, Forest C. SAMCell: Generalized label-free biological cell segmentation with segment anything. PLoS One. 2025 Sep 8;20(9):e0319532. doi: 10.1371/journal.pone.0319532. PMID: 40920883; PMCID: PMC12416835.

Ghoshal D, Petersen I, Ringquist R, Kramer L, Bhatia E, Hu T, Richard A, Park R, Corbin J, Agarwal S, Thomas A, Ramirez S, Tharayil J, Downey E, Ketchum F, Ochal A, Sonthi N, Lonial S, Kochenderfer JN, Tran R, Zhu M, Lam WA, Coskun AF, Roy K. Multi-niche human bone marrow on-a-chip for studying the interactions of adoptive CAR-T cell therapies with multiple myeloma. Biomaterials. 2025 May;316:123016. doi: 10.1016/j.biomaterials.2024.123016. Epub 2024 Dec 15. PMID: 39709851.